Question 1 · Short Answer & Biochemical Classification
7 marks(a) Name the type of bond formed between two amino acid monomers when a dipeptide is formed, and name the small molecule released in this reaction. [2]
(b) State the level of protein structure described by the term 'the specific sequence of amino acids in a polypeptide chain'. [1]
(c) Explain how hydrogen bonding contributes to the alpha-helix structure found in some proteins. [2]
(d) State one property of water, other than being a good solvent, that is important for living organisms, and briefly explain its biological significance. [2]
(b) State the level of protein structure described by the term 'the specific sequence of amino acids in a polypeptide chain'. [1]
(c) Explain how hydrogen bonding contributes to the alpha-helix structure found in some proteins. [2]
(d) State one property of water, other than being a good solvent, that is important for living organisms, and briefly explain its biological significance. [2]
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Worked solution
(a) A peptide bond is formed, and water is released (in a condensation reaction).
(b) This describes the primary structure of a protein.
(c) Hydrogen bonds form regularly between the C=O group of one amino acid and the N-H group of another amino acid, occurring at regular intervals along the polypeptide backbone; these numerous hydrogen bonds pull the chain into a regularly coiled, helical shape (the alpha-helix), stabilising this secondary structure.
(d) Example: water has a high specific heat capacity, meaning a relatively large amount of energy is needed to raise its temperature; this helps to buffer organisms and aquatic habitats against rapid temperature fluctuations, providing a thermally stable environment for metabolic reactions. (Other valid answers: high latent heat of vaporisation, important for cooling by sweating/transpiration; cohesion, important for water transport in the xylem; water's role as a metabolite/reactant in reactions such as hydrolysis and photosynthesis.)
(b) This describes the primary structure of a protein.
(c) Hydrogen bonds form regularly between the C=O group of one amino acid and the N-H group of another amino acid, occurring at regular intervals along the polypeptide backbone; these numerous hydrogen bonds pull the chain into a regularly coiled, helical shape (the alpha-helix), stabilising this secondary structure.
(d) Example: water has a high specific heat capacity, meaning a relatively large amount of energy is needed to raise its temperature; this helps to buffer organisms and aquatic habitats against rapid temperature fluctuations, providing a thermally stable environment for metabolic reactions. (Other valid answers: high latent heat of vaporisation, important for cooling by sweating/transpiration; cohesion, important for water transport in the xylem; water's role as a metabolite/reactant in reactions such as hydrolysis and photosynthesis.)
Marking scheme
(a) [1] peptide bond; [1] water. (b) [1] primary structure. (c) [1] correctly identifies hydrogen bonding between C=O and N-H groups (or 'between adjacent turns of the chain'/'between amino acids at regular intervals'); [1] correctly links this to the regular coiling/stability of the helix. (d) [1] valid property named (high specific heat capacity, high latent heat of vaporisation, cohesion/surface tension, or role as a reactant); [1] correct, clearly explained biological significance of that property.